E. Reference data

Two files the curation stack (slidetap) reads to understand your site’s data model and local code vocabulary.

• model.json — defines the attribute and observation model; copy the default to get started.
• mappers.xlsx — translates your site’s local short codes into BigPicture-standard coded attributes.
• Staining mapping — SNOMED CT codes, mapping modes, and naming conventions for staining attributes.

Note

These two files are a slidetap concept, not a pipeline-only one — the same model.json and mappers.xlsx are needed wherever the curation UI runs. The placement steps on the pages below (make setup-refdata, PIPELINE_REFDATA_DIR) are pipeline-specific; on the Direct components path you supply the same two files wherever your slidetap deployment expects them.